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Evidence-based GLP-1 & peptide discussion since 2023
ForumsCOA & Analytical TestingLC-MS/MS vs HPLC for peptide analysis — which is more reliable? Page 3

LC-MS/MS vs HPLC for peptide analysis — which is more reliable?

HPLC_Greg Wed, Jun 3, 2026 at 8:25 AM 19 replies 492 viewsPage 3 of 4
lisa_labSD
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Jun 4, 2026 at 1:23 PM#11
chris_chi24 said:
They are not contradictory, they measure different things, and this is the single most common misreading of a certificate.

Thank you for spelling out the reasoning rather than just the conclusion.

23 21stefan_berlin, Dr.EM_Chicago, pete_RVA and 20 others
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paige_pharma
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Jun 5, 2026 at 12:02 AM#12

From the other side of the consultation, briefly.

Reconstituted peptide stability data for certificates of analysis: I had Janoshik test my reconstituted vial at day 1, day 14, and day 28 stored in the refrigerator.

Day 1: 99.6% purity
Day 14: 98.4% purity
Day 28: 99.2% purity

Minimal degradation over 28 days when properly refrigerated. This confirms the standard 28-day beyond-use date is appropriate. Beyond 28 days, I'd reconstitute a fresh vial to be safe.

24 22Dr.SurgeonPGH, rachel_ABQ, traveltech_sara and 21 others
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mike_nyc
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Jun 5, 2026 at 10:41 AM#13
Dr.NateNeph said:
COA red flags for certificates of analysis — here's what to look for when reviewing a Certificate of Analysis: No HPLC data: If there's no…

Community-verified vendors for certificates of analysis: I maintain a spreadsheet of Janoshik-verified test results submitted by community members. Across 64 submitted tests:

  • 85% tested at ≥98% purity
  • 10% tested at 95-98% purity
  • 5% tested at <95% purity (concerning)

The vendors with consistently high purity results are listed in the Vendor Directory. We update monthly based on new community submissions.

Last edited: Jun 5, 2026 at 2:41 PM
25 23Dr.EM_Chicago, pete_RVA, CarlaRPh_TPA and 22 others
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Sigma-Aldrich — Research-Grade Standards

Certified reference materials, analytical reagents, and research-grade standards for peptide verification. Trusted by laboratories worldwide.

Shop Reference Standards
BiostatsBrad
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Jun 5, 2026 at 9:20 PM#14
HPLC_Greg said:
The provenance questions are more useful than the numbers.

HPLC results interpretation for certificates of analysis: when you get your Janoshik report back, here's what the numbers mean:

  • Purity %: Should be >97%. Below 95% is concerning.
  • Retention time: Should match reference standard for the peptide
  • Related substances: Degradation products should be <2% total
  • Single impurity: No individual impurity should exceed 1%

My last batch: 99.5% purity, 0.1% total related substances. Clean chromatogram with single sharp peak at expected retention time. Exactly what you want to see.

26 24james_edin, FranDenver, Dr.BariatricHTX and 23 others
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mike_mod
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Jun 6, 2026 at 7:59 AM#15

Moderator note: leaving this open. It is being argued well and the disagreement is the useful part. Report rather than reply if it drifts again.

27 0PurityPaulOR, MaxMetOK, MounjBrad and 24 others
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