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Evidence-based GLP-1 & peptide discussion since 2023
ForumsPharmacology & MechanismsMolecular dynamics simulations of GLP-1R binding — anyone have experience? Page 2

Molecular dynamics simulations of GLP-1R binding — anyone have experience?

SkepticalSean Mon, Jul 22, 2024 at 8:00 AM 47 replies 3,019 viewsPage 2 of 10
Dr.GutHealth
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Jul 22, 2024 at 9:09 AM#6
TrialTracker_MD said:
PK/PD modeling for the pharmacology: understanding the pharmacokinetics helps optimize dosing.

Semaglutide structural biology relevant to the pharmacology: semaglutide is a 31-amino acid peptide with 94% homology to native GLP-1(7-36). Three key modifications enable its pharmacokinetic profile:

  1. Aib8 substitution: DPP-4 resistance (prevents enzymatic degradation)
  2. Arg34 substitution: improved chemical stability
  3. C18 fatty diacid at Lys26: albumin binding → long half-life

These three modifications transform a peptide with a 2-minute half-life (native GLP-1) into one with a 168-hour half-life (semaglutide). A masterclass in peptide engineering.

47 17VanRx_Mike, steve_okc, dave_SLC and 44 others
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lucas_SP_BR
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São Paulo, BR
Jul 22, 2024 at 9:36 AM#7
SkepticalSean said:
I went looking for why the dosing schedule is what it is and found that almost every practical question on this board has a pharmacokinetic answer…

Pharmacist here. I want to add the drug interaction perspective on the pharmacology.

Key points from a pharmacokinetic standpoint:

  • GLP-1 agonists delay gastric emptying, which can affect Tmax of co-administered oral medications
  • Monitor patients on warfarin (INR), levothyroxine (TSH), and oral contraceptives during dose titration
  • The albumin-binding mechanism of semaglutide (C-18 fatty acid linker) gives it the ~168-hour half-life that enables weekly dosing
  • Steady state is reached at approximately 4-5 weeks after dose initiation or adjustment

Re: the pharmacology specifically — the pharmacology here is well-characterized and the clinical implications are straightforward.

Last edited: Jul 22, 2024 at 11:36 AM
46 16Dr.ObesityLA, NurseKim_ATL, paul_denver and 43 others
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james_edin
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Edinburgh, UK
Jul 22, 2024 at 10:03 AM#8
Dr.GutHealth said:
Semaglutide structural biology relevant to the pharmacology: semaglutide is a 31-amino acid peptide with 94% homology to native GLP-1(7-36).

Receptor pharmacology relevant to the pharmacology: semaglutide is a GLP-1R agonist with a C-18 fatty acid chain that enables albumin binding (>99%), creating a depot effect with a ~168-hour half-life enabling weekly dosing[1].

Tirzepatide is a dual GIP/GLP-1R agonist with higher GIP affinity (5:1 GIP:GLP-1 potency ratio). The GIP component may enhance beta-cell function and adipocyte lipid metabolism beyond what GLP-1 alone achieves.

For the pharmacology, the pharmacology explains the clinical differences between these agents.

References:
[1] Lau J, et al. J Med Chem. 2015;58(18):7370-7380.
45 15tane_welly, Dr.PathRoch, mona_PHX and 42 others
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raj_cambridge
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Jul 22, 2024 at 10:30 AM#9

One thing that is still open after traveltech_sara’s answer:

What would you measure differently if you were starting again?

44 14PharmHunterJen, TomTeleRx, DoseLogDan and 41 others
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SkepticalSean
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Maine
Jul 22, 2024 at 12:42 PM#10

Reporting back.

Update — tachyphylaxis to the gastric effect, persistence of the appetite effect. Two curves, and I had been watching the wrong one.

10 8Dr.LipidDallas, alex_tucson, kevin_tulsa and 7 others
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