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ForumsCOA & Analytical TestingEndotoxin testing methods — what worked for you? Page 3

Endotoxin testing methods — what worked for you?

mona_PHX Thu, Jul 3, 2025 at 3:18 AM 29 replies 1,900 viewsPage 3 of 6
JenPlateau
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Jul 7, 2025 at 10:53 AM#11
Dr.CardioMD said:
Inter-laboratory variation comes from real methodological differences, not sloppiness: which reference standard was used and how it was itself…

This answered a question I did not know how to ask.

48 21HPLC_Greg, LibrarianMeg, bri_stats and 45 others
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roxy_nash
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Jul 9, 2025 at 4:24 AM#12

Adding the clinical framing, because it changes how the question reads.

Mass spectrometry confirmation for certificates of analysis: beyond HPLC purity, mass spec tells you the molecule's exact molecular weight. This confirms identity — not just purity.

Why this matters: HPLC can show you a "pure" compound, but if it's pure of the WRONG compound, purity is meaningless. Mass spec at m/z 4113.58 Da confirms it's actually semaglutide. My Janoshik report includes both HPLC and mass spec.

If your testing provider only offers HPLC, consider upgrading to include mass spec for at least your first batch from a new vendor.

Last edited: Jul 9, 2025 at 10:24 AM
49 22roxy_nash, tony_orlando, Dr.NephBHM_UK and 46 others
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mike_nyc
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Jul 10, 2025 at 9:54 PM#13
anna.melb_AU said:
Vendor quality matters when discussing certificates of analysis.

Community-verified vendors for certificates of analysis: I maintain a spreadsheet of Janoshik-verified test results submitted by community members. Across 55 submitted tests:

  • 75% tested at ≥98% purity
  • 18% tested at 95-98% purity
  • 7% tested at <95% purity (concerning)

The vendors with consistently high purity results are listed in the Vendor Directory. We update monthly based on new community submissions.

Last edited: Jul 11, 2025 at 1:54 AM
50 23Dr.EM_Chicago, pete_RVA, CarlaRPh_TPA and 47 others
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Sigma-Aldrich — Research-Grade Standards

Certified reference materials, analytical reagents, and research-grade standards for peptide verification. Trusted by laboratories worldwide.

Shop Reference Standards
SleepDoc_PDX
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Portland, OR
Jul 12, 2025 at 3:24 PM#14
mona_PHX said:
They are not contradictory, they measure different things, and this is the single most common misreading of a certificate.

I tested my certificates of analysis batch through Janoshik — 97.3% purity. That's within acceptable range for compounded peptides. Turnaround was 10 business days.

The test costs ~$120 but gives you actual HPLC chromatography data plus mass spec confirmation. For the peace of mind alone, it's worth every penny. I test every new batch from a new vendor.

1 24sophie_paris
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Admin
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Jul 14, 2025 at 8:53 AM#15

Moderator note: a post naming a supplier has been edited. Discuss suppliers in the review sections, not here. Tagging this one for the weekly digest.

2 0PeptideSynthNJ, Dr.KarenChen
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